Command Line Tools (CWL)

Ctrlk

MSK-ACCESS command-line tools
ABRA2
access_utils
bcftools
Bedtools
Biometrics
Delly
Disambiguate
Fastp
Fgbio
GATK
GetBaseCountsMultiSample
Manta
Marianas
MultiQC
MuTect
Merge Fastq
Mosdepth
Octopus
Oncokb_annotator
Picard Tools
Postprocessing variant calls
sequence_qc
SnpSift
Trim Galore
Ubuntu utilites
VarDictJava
VCF2MAF
Waltz

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Postprocessing variant calls

vardict_filter_case-control 0.1.5 vardict_filter_single-sample 0.1.5 maf_annotated_by_bed_0.2.2 maf_annotated_by_tsv_0.2.3 maf_filter_cmoch_0.2.3 maf_tag_cmoch_0.2.3 maf_annotated_by_bed_0.2.3

PreviousMarkDuplicates v4.1.8.1 Nextvardict_filter_case-control 0.1.5

Last updated 3 years ago