Command Line Tools (CWL)

Ctrlk

MSK-ACCESS command-line tools
ABRA2
access_utils
bcftools
Bedtools
Biometrics
Delly
Disambiguate
Fastp
Fgbio
GATK
GetBaseCountsMultiSample
Manta
Marianas
MultiQC
MuTect
Merge Fastq
Mosdepth
Octopus
Oncokb_annotator
Picard Tools
Postprocessing variant calls
sequence_qc
SnpSift
Trim Galore
Ubuntu utilites
VarDictJava
VCF2MAF
Waltz

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bcftools

bcftools bgzip v1.15.1 bcftools concat v1.15.1 bcftools norm v1.15.1 bcftools sort v1.15.1 bcftools tabix v1.15.1

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Last updated 3 years ago