Command Line Tools (CWL)
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Command Line Tools (CWL)
  • MSK-ACCESS command-line tools
  • ABRA2
  • access_utils
  • bcftools
  • Bedtools
  • Biometrics
    • extract
    • minor
    • major
    • genotype
    • sexmismatch
  • Delly
  • Disambiguate
  • Fastp
  • Fgbio
  • GATK
  • GetBaseCountsMultiSample
  • Manta
  • Marianas
  • MultiQC
  • MuTect
  • Merge Fastq
  • Mosdepth
  • Octopus
  • Oncokb_annotator
  • Picard Tools
  • Postprocessing variant calls
  • sequence_qc
  • SnpSift
  • Trim Galore
  • Ubuntu utilites
  • VarDictJava
  • VCF2MAF
  • Waltz
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Biometrics

extractchevron-rightminorchevron-rightmajorchevron-rightgenotypechevron-rightsexmismatchchevron-right
Previoussortbed v2.28.0_cv2chevron-leftNextextractchevron-right

Last updated 4 years ago