Command Line Tools (CWL)

Ctrlk

MSK-ACCESS command-line tools
ABRA2
access_utils
bcftools
Bedtools
Biometrics
Delly
Disambiguate
Fastp
Fgbio
GATK
GetBaseCountsMultiSample
Manta
Marianas
MultiQC
MuTect
Merge Fastq
Mosdepth
Octopus
Oncokb_annotator
Picard Tools
Postprocessing variant calls
sequence_qc
SnpSift
Trim Galore
Ubuntu utilites
VarDictJava
VCF2MAF
Waltz

Powered by GitBook

On this page

Marianas

Collapsing First Pass v1.8.1 Collapsing Second Pass v1.8.1 Process Loop UMI v1.8.1 Seprate BAMs v1.8.1

PreviousManta v1.5.1 NextCollapsing First Pass v1.8.1

Last updated 3 years ago