Command Line Tools (CWL)

Ctrlk

MSK-ACCESS command-line tools
ABRA2
access_utils
bcftools
Bedtools
Biometrics
Delly
Disambiguate
Fastp
Fgbio
GATK
GetBaseCountsMultiSample
Manta
Marianas
MultiQC
MuTect
Merge Fastq
Mosdepth
Octopus
Oncokb_annotator
Picard Tools
Postprocessing variant calls
sequence_qc
SnpSift
Trim Galore
Ubuntu utilites
VarDictJava
VCF2MAF
Waltz

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Fgbio

CallDuplexConsensusReads v1.2.0 CollectDuplexSeqMetrics v1.2.0 GroupReadsByUmi v1.2.0 FastqToBam v1.2.0 FilterConsensusReads v1.2.0 simplex_filter v0.1.8

Previous0.24.0 NextCallDuplexConsensusReads v1.2.0

Last updated 3 years ago