Command Line Tools (CWL)

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Command Line Tools (CWL)

MSK-ACCESS command-line tools
ABRA2
access_utils
bcftools
Bedtools
Biometrics
Delly
Disambiguate
Fastp
Fgbio
GATK
GetBaseCountsMultiSample
Manta
Marianas
MultiQC
MuTect
Merge Fastq
Mosdepth
Octopus
Oncokb_annotator
Picard Tools
Postprocessing variant calls
sequence_qc
SnpSift
Trim Galore
Ubuntu utilites
VarDictJava
VCF2MAF
Waltz

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Bedtools

genomecov v2.28.0_cv2 merge v2.28.0_cv2 sortbed v2.28.0_cv2

Previousbcftools tabix v1.15.1 Nextgenomecov v2.28.0_cv2

Last updated 3 years ago