MarkDuplicates v2.8.1

Version of tools in docker image (/container/Dockerfile)

Tool	Version	Location
java base image	8	-
picard	2.8.1	https://github.com/broadinstitute/picard/releases/download/2.8.1/picard.jar
R	3.3.3	r-base for opnejdk:8

CWL

• CWL specification 1.0

• Use example_inputs.yaml to see the inputs to the cwl

• Example Command using toil:

    > toil-cwl-runner picard_mark_duplicates_2.8.1.cwl example_inputs.yaml