Command Line Tools (CWL)

Ctrlk

MSK-ACCESS command-line tools
ABRA2
access_utils
bcftools
Bedtools
Biometrics
Delly
Disambiguate
Fastp
Fgbio
GATK
GetBaseCountsMultiSample
Manta
Marianas
MultiQC
- MultiQC v1.10.1.7
- MultiQC v1.12
MuTect
Merge Fastq
Mosdepth
Octopus
Oncokb_annotator
Picard Tools
Postprocessing variant calls
sequence_qc
SnpSift
Trim Galore
Ubuntu utilites
VarDictJava
VCF2MAF
Waltz

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MultiQC

MultiQC v1.10.1.7 MultiQC v1.12

PreviousSeprate BAMs v1.8.1 NextMultiQC v1.10.1.7

Last updated 3 years ago