Command Line Tools (CWL)

⌘Ctrlk

Command Line Tools (CWL)

MSK-ACCESS command-line tools
ABRA2
access_utils
bcftools
Bedtools
Biometrics
Delly
Disambiguate
Fastp
Fgbio
GATK
GetBaseCountsMultiSample
Manta
Marianas
MultiQC
MuTect
Merge Fastq
Mosdepth
Octopus
Oncokb_annotator
Picard Tools
Postprocessing variant calls
sequence_qc
SnpSift
Trim Galore
Ubuntu utilites
VarDictJava
VCF2MAF
Waltz

Powered by GitBook

On this page

GATK

ApplyBQSR v4.1.2.0 ApplyBQSR v4.1.8.1 BaseRecalibrator v4.1.2.0 BaseRecalibrator v4.1.8.1 MergeBamAlignment v4.1.8.0 MergeSamFiles v4.1.8.0 SamToFastq v4.1.8.0

Previoussimplex_filter v0.1.8 NextApplyBQSR v4.1.2.0

Last updated 3 years ago