MarkDuplicates v1.96

Version of tools in docker image (/container/Dockerfile)

Tool	Version	Location
java base image	8	-
picard	1.96	https://sourceforge.net/projects/picard/files/picard-tools/1.96/picard-tools-1.96.zip
R	3.3.3	r-base for opnejdk:8

CWL

• CWL specification 1.0

• Use example_inputs.yaml to see the inputs to the cwl

• Example Command using toil:

    > toil-cwl-runner picard_mark_duplicates_1.96.cwl example_inputs.yaml