Uncollapsed Bam Generation
1.0.0
1.0.0
  • Introduction
  • Requirements
  • Installation and Usage
  • Tools Used
  • Inputs Description
  • Outputs Description
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Tools Used

Versions of tools in order of process

PreviousInstallation and UsageNextInputs Description

Last updated 4 years ago

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Tool

Version

(Fgbio)

1.2.0

(Picard tools part of GATK)

4.1.8.0

********

0.20.1

4.1.8.0

0.7.17

(Picard tools part of GATK)

4.1.8.1

(Picard tools part of GATK)

4.1.8.0

(Picard tools part of GATK)

4.1.8.1

(Bedtools)

2.28.0_cv2

(Bedtools)

2.28.0_cv2

2.22

(Picard tools part of GATK)

4.1.8.1

FastqToBam
SamToFastq
Fastp
MergeSamFiles
BWA mem
AddOrReplaceReadGroups
MergeBamAlignment
MarkDuplicates
GenomeCov
Merge
ABRA
FixMateInformation