Outputs Description

Here are the various outputs of the workflow

File Name

File Description

sample-name_fastp_out.html

Trimming metrics from fastp in html format

sample-name_fastp_out.json

Trimming metrics from fastp in json format

sample-name_fx.bam

Binary alignment map (BAM) file generated after FixMateInformation

sample-name_fx.bai

The binary alignment index (BAI) file associated with the FixMateInformation bam file

sample-name_duplication_metrics.txt

Metrics file for MarkDuplicated bam file.

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