Uncollapsed Bam Generation
1.0.0
1.0.0
  • Introduction
  • Requirements
  • Installation and Usage
  • Tools Used
  • Inputs Description
  • Outputs Description
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Requirements

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Last updated 4 years ago

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Before of the pipeline, make sure your system supports these requirements

Following are the requirements for running the workflow:

  • A system with either or configured.

  • Python 3.6 (for running and running )

    • Python Packages (will be installed as part of pipeline installation):

      • toil[cwl]==4.2.0

      • pytz==2020.1

      • typing==3.7.4.3

      • ruamel.yaml==0.16.5

      • pip==20.2.3

      • bumpversion==0.6.0

      • wheel==0.35.1

      • watchdog==0.10.3

      • flake8==3.8.4

      • tox==3.20.0

      • coverage==5.3

      • twine==3.2.0

      • pytest==6.1.1

      • pytest-runner==5.2

      • coloredlogs==10.0

      • pytest-travis-fold==1.3.0

  • Python Virtual Environment using or .

Installation
docker
singularity
cwltool
toil-cwl-runner
virtualenv
conda