Requirements

Requirements

Before Installation of the pipeline, make sure your system supports these requirements

Following are the requirements for running the workflow:

• A system with either docker or singularity configured.

• Python 3.6 (for running cwltooland running toil-cwl-runner)

  • Python Packages (will be installed as part of pipeline installation):

    • toil[cwl]==5.1.0

    • pytz==2021.1

    • typing==3.7.4.3

    • ruamel.yaml==0.16.5

    • pip==20.2.3

    • bumpversion==0.6.0

    • wheel==0.35.1

    • watchdog==0.10.3

    • flake8==3.8.4

    • tox==3.20.0

    • coverage==5.3

    • twine==3.2.0

    • pytest==6.1.1

    • pytest-runner==5.2

    • coloredlogs==10.0

    • pytest-travis-fold==1.3.0

  • Python Virtual Environment using virtualenv or conda.