Introduction

Workflow that creates all the bam files for the MSK-ACCESS fastq file

• Free software: Apache Software License 2.0

• Documentation: https://msk-access.gitbook.io/nucleo

Features

Given a pair-end fastq file generate collapsed fastq and standard, unfiltered, duplex and simplex Binary Alignment File

Nucleo

Installation

Clone the repository:

git clone --depth 50 https://github.com/msk-access/nucleo.git

Credits

• CMO cfDNA Informatics Team

• Cookiecutter: https://github.com/audreyr/cookiecutter

• audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage