Introduction
Workflow that creates all the bam files for the MSK-ACCESS fastq file
Free software: Apache Software License 2.0
Documentation: https://msk-access.gitbook.io/nucleo
Features
Given a pair-end fastq file generate collapsed fastq and standard, unfiltered, duplex and simplex Binary Alignment File
Installation
Clone the repository:
git clone --depth 50 https://github.com/msk-access/nucleo.gitCredits
CMO cfDNA Informatics Team
Cookiecutter: https://github.com/audreyr/cookiecutter
audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage
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