Nucleo
  • Introduction
  • Requirements
  • Installation and Usage
  • Tools Description
  • Inputs Description
  • Outputs Description
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  • Features
  • Installation
  • Credits

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Introduction

Workflow that creates all the bam files for the MSK-ACCESS fastq file

NextRequirements

Last updated 4 years ago

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  • Free software: Apache Software License 2.0

  • Documentation:

Features

Given a pair-end fastq file generate collapsed fastq and standard, unfiltered, duplex and simplex Binary Alignment File

Installation

Clone the repository:

git clone --depth 50 https://github.com/msk-access/nucleo.git

Credits

  • CMO cfDNA Informatics Team

Cookiecutter:

audreyr/cookiecutter-pypackage:

https://github.com/audreyr/cookiecutter
https://github.com/audreyr/cookiecutter-pypackage
https://msk-access.gitbook.io/nucleo
Build Status
Updates
Python 3
Nucleo