Nucleo Quality Control
  • 🌸Nucleo Quality Control
    • Workflow description
    • Requirements
    • Installation and Usage
    • Workflow inputs
      • Input for nucleo_qc.cwl
      • Input for nucleo_aggregate_visualize.cwl
    • Workflow outputs
    • ☀️Interpretation - MultiQC
      • Summary QC metrics
      • Coverage vs GC content
      • Capture Metrics
      • Insert Size
      • Target coverage distribution
      • Duplex Metrics
        • Duplex family sizes
        • Simplex family sizes
        • Duplex yield metrics
      • Mean Base Quality
      • Duplex Noise Metrics
      • Contamination
        • Hotspot in Normals
        • Major contamination
        • Minor contamination
        • Contributing sites
      • Fingerprinting
      • QC thresholds
  • 🇬🇷Interpretation - Athena Coverage report
    • Installation and running
    • Interpretation coverage report
      • Report details
      • Summary
      • Exons with <100% coverage at 500x
      • Per gene coverage summary
      • Per exon coverage
      • Coverage of Known Variants
      • Coverage per chromosome
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  1. Interpretation - Athena Coverage report
  2. Interpretation coverage report

Summary

PreviousReport detailsNextExons with <100% coverage at 500x

Last updated 2 years ago

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The summary section provides an overview of the report as seen below. Key information about the panel and coverage threshold and statistics are displayed. For example in this report the coverage threshold was set at 500X and the number of genes not covered 100% at 500X were 8.

The plot in the summary section diagrammatically illustrates which genes have an overall coverage above 99% (green), below 99% (yellow) and below 95% (red).

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