CMO Cell Free DNA Informatics
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On this page
  • Confluence knowledgebase across collabrators
  • CMO Project Managers
  • People to connect
  • Integrated Genomics Operations (IGO)
  • People to connect
  • CMO Informatics (CI)
  • People to connect
  • Berger Lab/Technology Innovation Lab/CMO Computational Science (CCS)
  • People to connect
  • Clinical Bioinformatics (ClinBx)
  • People to know
  • High Performance Computing (HPC)

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  1. The OnBoarding

Collaborations

This will help you to find correct people to connect with from the subgroups.

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Last updated 3 years ago

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In all the groups there are multiple amazing individuals involved, but listing just a few

Confluence knowledgebase across collabrators

CMO Project Managers

CCI works closely with CMO project managers to track the progress of cfDNA projects submitted to CMO by MSK researchers. CMO project managers support CCI by facilitating and coordinating project initiation, sample collection, and metadata collection.

People to connect

Integrated Genomics Operations (IGO)

CCI works with to make sure that the data generated for the cfDNA assays is of the highest standards.

People to connect

CMO Informatics (CI)

CCI works closely with CMO Software Engineering (CSE) team within CI to support the development of Voyager & Hermes. The CSE/CAS team supports the development, integration, processing of CCI’s workflows implemented in Voyager.

People to connect

CMO Software Engineers (CSE)

CMO Analysis Systems (CAS)

Berger Lab/Technology Innovation Lab/CMO Computational Science (CCS)

CCI collaborates with scientists in various CMO groups to improve the existing workflows and to analyze the data in a consistent manner.

People to connect

Berger Lab

Technology Innovation Lab

CMO Computational Sciences (CCS)

Clinical Bioinformatics (ClinBx)

CCI works closely with the ClinBx group in the Molecular Diagnostics Service to deploy core workflows and maintain consistency among analyses performed on research and clinical cfDNA samples. We work together to improve the workflows in sync and to learn from one another about how to identify artifacts and interpret the data. CCI is also working with the ClinBx Software group to port an instance of the mPATH system used by the ClinBx team to sign-out cases for research.

People to know

High Performance Computing (HPC)

CCI works with HPC to request resources and support w.r.t JUNO cluster and virtual machines that enable various aspects of our goals.

Slack Channel

hpc-request@cbio.mskcc.org

Kirsten Fuller
Casey Savin
Jennifer Milbank
Neeman Mohibullah
Ruchi Patel
Marisa Dunigan
David Mcmanamon
Christopher Allan Bolipata
Sinisa Ivkovic
Nikhil Kumar
Timothy Song
Stephen Kelly
Suleman Vural
Kanika Arora
Shalabh Suman
Chaitanya Bandlamundi
Brian Loomis
David Brown
Mark Donoghue
Yixiao Gong
Rose Brannon
Aijazuddin Syed
Ryan Ptashkin
Anoop Balakrishnan
Neeraj Girija
Lohit Valleru
https://mskconfluence.mskcc.org/x/vzV2Bmskconfluence.mskcc.org
Link to Knowledgebase for information across groups
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