Software Engineers
Please visit this page once you have done things necessary here: https://mskcc.github.io/on-boarding/
The best place to start would be to understand the data flow:
LIMS/SMILE -> Voyager -> JUNO
Learn more about the codebases listed below that form Voyager
Learn about the codebases the form mPATH
Sites
Code/Project Management
ACCESS/Voyager team uses this to manage sprints/stories. In addition, ACCESS uses this to keep track of the statuses of samples.
Auto Track Sample Status
Internal Gitlab where MPath and other software is hosted.
Code specific to ACCESS team pipelines.
Code for other CMO/MSK teams
Information on HPC/LSF
Beagle
Hermes
Ridgeback
Applications
LIMS
Beagle API
http://silo:4001 (Staging)
http://voyager:5001 (Production)
Ridgeback API
http://silo:4003 (Staging)
http://voyager:5003 (Production)
Flower (Celery Task UI) for Voyager, for Production only
http://voyager:4001
ELK for Voyager
MPath (for Clinical)
MPath (for Research)
http://access01:7331/api/ui/
CVR (to be replaced by MPath)
cvr.mskcc.org:8083/
People
Projects, who to speak with, slack channel
MPath & CVR (Aijazuddin Syed/Anoop Balakrishnan Rema)
Voyager Projects [Beagle/Seqosystem/Ridgeback] (Sinisa Ivkovic/Nikhil Kumar/Allan Bolipata)
#voyager
LIMS (David Mcmanamon)
MDB (Angelica Ochoa/Benjamin Gross/Allan Bolipata)
#metadb-informatics
Toil/CWL (Nikhil Kumar)
ACCESS (Ronak Shah)
#msk-access
ACCESS Servers (HPC Request/Neeraj Paramasivam)
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