Software Engineers
Please visit this page once you have done things necessary here: https://mskcc.github.io/on-boarding/
The best place to start would be to understand the data flow:
LIMS/SMILE -> Voyager -> JUNO
Learn more about the codebases listed below that form Voyager
Learn about the codebases the form mPATH
Sites
Code/Project Management
Resource | URL |
---|---|
ACCESS/Voyager team uses this to manage sprints/stories. In addition, ACCESS uses this to keep track of the statuses of samples. | |
Auto Track Sample Status | |
Internal Gitlab where MPath and other software is hosted. | http://crux.mskcc.org:8929/mpath http://crux.mskcc.org:8929/access (forked from mpath repositories) |
Code specific to ACCESS team pipelines. | |
Code for other CMO/MSK teams | |
Information on HPC/LSF | |
Beagle | |
Hermes | |
Ridgeback |
Applications
Application | URL |
---|---|
LIMS | For Authentication ask your Manager: https://igolims.mskcc.org:8443/LimsRest/swagger-ui.html |
Beagle API |
|
Ridgeback API |
|
Flower (Celery Task UI) for Voyager, for Production only | http://voyager:4001 |
ELK for Voyager | |
MPath (for Clinical) | |
MPath (for Research) | http://access01:7331/api/ui/ |
CVR (to be replaced by MPath) | cvr.mskcc.org:8083/ |
People
Projects, who to speak with, slack channel
MPath & CVR (Aijazuddin Syed/Anoop Balakrishnan Rema)
Voyager Projects [Beagle/Seqosystem/Ridgeback] (Sinisa Ivkovic/Nikhil Kumar/Allan Bolipata)
#voyager
LIMS (David Mcmanamon)
MDB (Angelica Ochoa/Benjamin Gross/Allan Bolipata)
#metadb-informatics
Toil/CWL (Nikhil Kumar)
ACCESS (Ronak Shah)
#msk-access
ACCESS Servers (HPC Request/Neeraj Paramasivam)
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