Nucleo Quality Control
  • 🌸Nucleo Quality Control
    • Workflow description
    • Requirements
    • Installation and Usage
    • Workflow inputs
      • Input for nucleo_qc.cwl
      • Input for nucleo_aggregate_visualize.cwl
    • Workflow outputs
    • ☀️Interpretation - MultiQC
      • Summary QC metrics
      • Coverage vs GC content
      • Capture Metrics
      • Insert Size
      • Target coverage distribution
      • Duplex Metrics
        • Duplex family sizes
        • Simplex family sizes
        • Duplex yield metrics
      • Mean Base Quality
      • Duplex Noise Metrics
      • Contamination
        • Hotspot in Normals
        • Major contamination
        • Minor contamination
        • Contributing sites
      • Fingerprinting
      • QC thresholds
  • 🇬🇷Interpretation - Athena Coverage report
    • Installation and running
    • Interpretation coverage report
      • Report details
      • Summary
      • Exons with <100% coverage at 500x
      • Per gene coverage summary
      • Per exon coverage
      • Coverage of Known Variants
      • Coverage per chromosome
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  1. Nucleo Quality Control

Interpretation - MultiQC

Description for each section of the MultiQC report

PreviousWorkflow outputsNextSummary QC metrics

Last updated 2 years ago

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This section will guide you in how to interpret the output from running the ACCESS QC workflow. The main output from running the ACCESS QC workflow is a report (for both single sample and multiple samples). Each subsection explains certain parts of the MultiQC report.

Table of Contents

  • Summary QC metrics

  • Coverage vs GC content

  • Capture Metrics

  • Insert Size

  • Target coverage distribution

  • Duplex Metrics

  • Contamination

  • Fingerprinting

  • QC thresholds

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MultiQC