CHIP Variant Calling and Processing
  • Clonal Hematopoesis Varaint Calling and Process
  • Workflow Description
  • Requirements
  • Installation and Usage
  • Tools Description
  • Inputs Description
  • Output Description
  • Usage of individual commands
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Requirements

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Last updated 1 year ago

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The following requirements need to be fulfilled before running the pipeline.

  • A system with either or configured.

  • Python 3.6 and above (for running and running )

    • Python Packages :

      • toil[cwl]

      • cwltool

    • Python Virtual Environment using or .

docker
singularity
cwltool
toil-cwl-runner
virtualenv
conda