Output Description

Files present after workflow is finished

Output File	Description
sample-name_vardict_STDFilter.txt	TXT file containing basic information on calls
sample-name_single_filter_vcf	VCF file with filtered SNPs
sample-name_single_filer_complex.vcf	VCF file with filtered complex variants
sample-name_vardict_concatenated.vcf	VCF file with both complex and simple Variants
sample-name_cosmic_count_annotated.vcf	VCF file with overall prevalence from COSMIC annotated
sample-name_cosmic_prevalence_annotated.vcf	VCF file with lineage prevalence from COSMIC annotated
sample-name_vcf2maf.maf	VCF file converted to MAF
sample-name_oncokb.maf	MAF file with VEP annotation
sample-name_mappability.maf	MAF file with annotation of mappable and unmappable regions in a binary format (Yes/No)
sample-name_complexity.maf	MAF file with annotation of low and high complexity regions in a binary format (Yes/No)
sample-name_hotspot.maf	MAF file with annotation of hotspot variations from 47K CHPD dataset in a binary format (Yes/No)
sample-name_47kchpd.maf	MAF file with annotation of variations from 47K CHPD dataset in a binary format (Yes/No)
sample-name_panmyeloid.maf	MAF file with annotation of variations from Pan-Myeloid dataset in a binary format (Yes/No)
sample-name_cmoch_filtered.maf	MAF file that are filtered with CH conditions.
sample-name_cmoch_tag.maf	Final Filetered MAF file that are tagged as CH-PD