BAM Collapsing
1.0.0
1.0.0
  • Introduction
  • Quickstart
  • Inputs Description
  • Tool Descriptions
  • Outputs Description
  • Github Specifications
    • Contributor Covenant Code of Conduct
    • Contributing
    • ISSUE_TEMPLATE
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Tool Descriptions

Tool descriptions and versions for Bam Collapsing workflow

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Last updated 4 years ago

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Tool

Version

1.2.0

1.2.0

1.2.0

4.1.8.0

0.7.17

4.1.8.1

4.1.8.0

2.28.0_cv2

2.28.0_cv2

2.22

4.1.8.1

1.2.0

0.1.8

2.8.1

Fgbio GroupReadsByUmi
Fgbio CollectDuplexSeqMetrics
Fgbio CallDuplexConsensusReads
GATK SamToFastq
BWA mem
Picard AddOrReplaceReadGroups
GATK MergeBamAlignment
bedtools genomecov
bedtools merge
ABRA2
Picard FixMateInformation
Fgbio FilterConsensusReads
Fgbio Post-processing
Picard CollectAlignmentSummaryMetrics