BAM Collapsing
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BAM Collapsing
  • Introduction
  • Quickstart
  • Inputs Description
  • Tool Descriptions
  • Outputs Description
  • Github Specifications
    • Contributor Covenant Code of Conduct
    • Contributing
    • ISSUE_TEMPLATE
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Tool Descriptions

Tool descriptions and versions for Bam Collapsing workflow

Tool

Version

Fgbio GroupReadsByUmiarrow-up-right

1.2.0

Fgbio CollectDuplexSeqMetricsarrow-up-right

1.2.0

Fgbio CallDuplexConsensusReadsarrow-up-right

1.2.0

GATK SamToFastqarrow-up-right

4.1.8.0

BWA memarrow-up-right

0.7.17

Picard AddOrReplaceReadGroupsarrow-up-right

4.1.8.1

GATK MergeBamAlignmentarrow-up-right

4.1.8.0

bedtools genomecovarrow-up-right

2.28.0_cv2

bedtools mergearrow-up-right

2.28.0_cv2

ABRA2arrow-up-right

2.22

Picard FixMateInformationarrow-up-right

4.1.8.1

Fgbio FilterConsensusReadsarrow-up-right

1.2.0

Fgbio Post-processingarrow-up-right

0.1.8

Picard CollectAlignmentSummaryMetricsarrow-up-right

2.8.1

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Last updated 5 years ago

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