BAM Collapsing
1.0.0
1.0.0
  • Introduction
  • Quickstart
  • Inputs Description
  • Tool Descriptions
  • Outputs Description
  • Github Specifications
    • Contributor Covenant Code of Conduct
    • Contributing
    • ISSUE_TEMPLATE
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Tool Descriptions

Tool descriptions and versions for Bam Collapsing workflow

Tool

Version

Fgbio GroupReadsByUmi

1.2.0

Fgbio CollectDuplexSeqMetrics

1.2.0

Fgbio CallDuplexConsensusReads

1.2.0

GATK SamToFastq

4.1.8.0

BWA mem

0.7.17

Picard AddOrReplaceReadGroups

4.1.8.1

GATK MergeBamAlignment

4.1.8.0

bedtools genomecov

2.28.0_cv2

bedtools merge

2.28.0_cv2

ABRA2

2.22

Picard FixMateInformation

4.1.8.1

Fgbio FilterConsensusReads

1.2.0

Fgbio Post-processing

0.1.8

Picard CollectAlignmentSummaryMetrics

2.8.1

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Last updated 4 years ago

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