Outputs Description

Files present after workflow is finished

Output File	Description
sample_name-collapsed_alignment_summary_metrics.txt	Collapsed alignment metrics
sample_name-duplex_alignment_summary_metrics.txt	Collapsed Duplex alignment metrics
sample_name-simplex_alignment_summary_metrics.txt	Collapsed Simplex alignment metrics
sample_name-duplex_family_sizes.txt	Duplex Family Size metrics
sample_name-duplex_umi_counts.txt	Duplex UMI count metrics
sample_name-duplex_yield_metrics.txt	Duplex yield metrics
sample_name-family_sizes.txt	UMI Family Size metrics
sample_name-umi_counts.txt	UMI Count metrics
sample_name-umi.hist.txt	UMI histogram file
sample_name-group.bam	Grouped BAM for duplex metrics calculation outside of the workflow
sample_name-collapsed.bam	Collapsed bam
sample_name-collapsed.bai	Collapsed bam index
sample_name-duplex.bam	Collapsed Duplex bam
sample_name-duplex.bai	Collapsed Duplex bam index
sample_name-simplex.bam	Collapsed Simplex bam
csample_name-simplex.bai	Collapsed Simplex bam index
collapsed_R1.fastq.gz	Collapsed Read 1 Fastq
collapsed_R2.fastq.gz	Collapsed Read 2 Fastq