Access Quality Control (v2)
MSK-ACCESS QC generation V2
add-qc-workflowdevelopMSK-ACCESS QC generation V2
MSK-ACCESS QC generation V2
add-qc-workflowdevelopMSK-ACCESS QC generation V2
  • MSK-ACCESS QC generation
  • Installation and Running
    • Requirements
    • Installation and Usage
    • Inputs Description
  • Interpretation
    • Sample meta information
    • Coverage vs GC bias
    • Insert size metrics
    • Target coverage distribution
    • Capture metrics
    • Duplex family metrics
    • Mean base quality
    • Duplex noise metrics
    • Contamination
    • Fingerprinting
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Interpretation

Guide on interpreting ACCESS QC workflow output.

PreviousInputs DescriptionNextSample meta information

Last updated 3 years ago

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This section will guide you in how to interpret the output from running the ACCESS QC workflow. The main output from running the ACCESS QC workflow is a report (for both single sample and multiple samples). Each subsection explains certain parts from the MultiQC report.

Tip: At the top of each MultiQC report produced by this workflow are three buttons: Show all, Hide tumor, and Hide normal. Each button will show/hide the respective samples from the report so you can more easily review it.

Tip: MultiQC comes with a lot of additional usability features that will not be described in this documentation. Please see for more information.

MultiQC
MultiQC docs