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Introduction

Workflow that creates all the bam files for the MSK-ACCESS fastq file

Free software: Apache Software License 2.0
Documentation: https://msk-access.gitbook.io/nucleo

Features

Given a pair-end fastq file generate collapsed fastq and standard, unfiltered, duplex and simplex Binary Alignment File

Installation

Clone the repository:

Credits

CMO cfDNA Informatics Team
Cookiecutter:
audreyr/cookiecutter-pypackage:

https://github.com/audreyr/cookiecutter

https://github.com/audreyr/cookiecutter-pypackage

Build Status

git clone --depth 50 https://github.com/msk-access/nucleo.git

Updates

Python 3