> For the complete documentation index, see [llms.txt](https://cmo-ci.gitbook.io/sequence-qc/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://cmo-ci.gitbook.io/sequence-qc/master.md).

# sequence\_qc

Package for doing various ad-hoc quality control steps from MSK-ACCESS generated FASTQ or BAM files

[![Build Status](https://travis-ci.com/msk-access/sequence_qc.svg?branch=master)](https://travis-ci.com/msk-access/sequence_qc) [![PyPi](https://img.shields.io/pypi/v/sequence_qc.svg?)](https://pypi.python.org/pypi/sequence_qc) [![Anaconda](https://anaconda.org/ionox0/sequence-qc/badges/version.svg)](https://anaconda.org/ionox0/sequence-qc/)

* Free software: Apache Software License 2.0
* Documentation: <https://msk-access.gitbook.io/sequence-qc/>

## Installation

From pypi:

`pip install sequence_qc`

From conda:

`conda install -c ionox0 -c conda-forge -c bioconda sequence-qc`