# Nucleo Quality Control ## Introduction This section aims to provide an introduction to the Nucleo Quality Control process along with installation and running instructions. The Nucleo QC process generated QC metrics for all type of BAM files generated by Nucleo, including collapsed, uncollapsed, duplex and simplex BAM files. The main outputs of the workflow are the MultiQC report and coverage report. Thorough intepretation of the output files can be found in this gitbook section. ## Credits * CMO cfDNA Informatics Team * Clinical Bioinformatics --- # Agent Instructions: Querying This Documentation If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question. Perform an HTTP GET request on the current page URL with the `ask` query parameter: ``` GET https://cmo-ci.gitbook.io/nucleo-quality-control/nucleo-quality-control.md?ask= ``` The question should be specific, self-contained, and written in natural language. The response will contain a direct answer to the question and relevant excerpts and sources from the documentation. Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.