> For the complete documentation index, see [llms.txt](https://cmo-ci.gitbook.io/nucleo-quality-control/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://cmo-ci.gitbook.io/nucleo-quality-control/nucleo-quality-control.md).

# Nucleo Quality Control

## Introduction

This section aims to provide an introduction to the Nucleo Quality Control process along with installation and running instructions. The Nucleo QC process generated QC metrics for all type of BAM files generated by Nucleo, including collapsed, uncollapsed, duplex and simplex BAM files. The main outputs of the workflow are the MultiQC report and coverage report. Thorough intepretation of the output files can be found in this gitbook section.

## Credits

* CMO cfDNA Informatics Team
* Clinical Bioinformatics