CMO ACCESS Data Analysis
  • Home
  • Github codebase
  • Setup
    • Installation
    • Setup for Running Analysis
    • Resources
    • CNA Result Processing
  • Analysis
    • Overview of Analysis Workflow
    • Compile Reads
    • Filter Calls
    • SV Incorporation
    • CNA Processing
    • Create Patient Report
    • Intermediate File Organization
  • Miscellaneous Utility Scripts
    • Convert CSV to MAF
    • Get cBioPortal Variants
    • Convert dates to days
    • Run create_report.R
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