Output Description

Output File

Description

sample-name_vardict_STDFilter.txt

TXT file containing basic information on calls

sample-name_single_filter_vcf

VCF file with filtered SNPs

sample-name_single_filer_complex.vcf

VCF file with filtered complex variants

sample-name_vardict_concatenated.vcf

VCF file with both complex and simple Variants

sample-name_cosmic_count_annotated.vcf

VCF file with overall prevalence from COSMIC annotated

sample-name_cosmic_prevalence_annotated.vcf

VCF file with lineage prevalence from COSMIC annotated

sample-name_vcf2maf.maf

VCF file converted to MAF

sample-name_oncokb.maf

MAF file with VEP annotation

sample-name_mappability.maf

MAF file with annotation of mappable and unmappable regions in a binary format (Yes/No)

sample-name_complexity.maf

MAF file with annotation of low and high complexity regions in a binary format (Yes/No)

sample-name_hotspot.maf

MAF file with annotation of hotspot variations from 47K CHPD dataset in a binary format (Yes/No)

sample-name_47kchpd.maf

MAF file with annotation of variations from 47K CHPD dataset in a binary format (Yes/No)

sample-name_panmyeloid.maf

MAF file with annotation of variations from Pan-Myeloid dataset in a binary format (Yes/No)

sample-name_cmoch_filtered.maf

MAF file that are filtered with CH conditions.

sample-name_cmoch_tag.maf

Final Filetered MAF file that are tagged as CH-PD