Powered by GitBook

1 of 1

Loading...

Software Engineers

Please visit this page once you have done things necessary here: https://mskcc.github.io/on-boarding/

The best place to start would be to understand the data flow:
- LIMS/SMILE -> Voyager -> JUNO
Learn more about the codebases listed below that form Voyager
Learn about the codebases the form mPATH

Sites

Code/Project Management

Resource

URL

Applications

Application

URL

People

Projects, who to speak with, slack channel

MPath & CVR ()
Voyager Projects [Beagle/Seqosystem/Ridgeback] ()
- #voyager

Beagle

Hermes

Ridgeback

MPath (for Research)

http://access01:7331/api/ui/

CVR (to be replaced by MPath)

cvr.mskcc.org:8083/

LIMS (David Mcmanamon)

MDB (Angelica Ochoa/Benjamin Gross/Allan Bolipata)

#metadb-informatics

Toil/CWL (Nikhil Kumar)

ACCESS (Ronak Shah)

#msk-access

ACCESS Servers (HPC Request/Neeraj Paramasivam)

ACCESS/Voyager team uses this to manage sprints/stories. In addition, ACCESS uses this to keep track of the statuses of samples.

Auto Track Sample Status

jira.mskcc.org:8090

Internal Gitlab where MPath and other software is hosted.

http://crux.mskcc.org:8929/mpath

http://crux.mskcc.org:8929/access (forked from mpath repositories)

Code specific to ACCESS team pipelines.

github.com/mskcc-access

Code for other CMO/MSK teams

github.com/mskcc

LIMS

For Authentication ask your Manager: https://igolims.mskcc.org:8443/LimsRest/swagger-ui.html

Beagle API

http://silo:4001 (Staging)
http://voyager:5001 (Production)

Ridgeback API

http://silo:4003 (Staging)
http://voyager:5003 (Production)

Flower (Celery Task UI) for Voyager, for Production only

http://voyager:4001

ELK for Voyager

bic-dockerapp01.mskcc.org:5601/

Aijazuddin Syed/Anoop Balakrishnan Rema

Sinisa Ivkovic/Nikhil Kumar/Allan Bolipata

Information on HPC/LSF

MPath (for Clinical)

https://mskcchpc.org/

https://github.com/mskcc/beagle

https://github.com/mskcc/hermes

https://github.com/mskcc/ridgeback

https://mpath.mskcc.org/