SMILE -> information associated with a sample. This is a current work-in-progress written in Java/Neo4J that is supposed to be the one source of truth for metadata associated with samples. Currently, these responsibilities are managed by Beagle.
LIMS -> Laboratory information management system -- when sequencing is complete, metadata and file information on the sequences is first input into this system.
-> triggers and monitors workflows. There's also a part of it that tracks files and metadata associated with those files which may be splintered out in the future. A request typically comes from LIMS which begins the workflow process.
-> a nicer interface for Beagle (sample workflow tracking) and soon the MDB (make updates to metadata)
-> An HTTP API for Toil which Beagle is reliant on for interacting with workflows.
-> A workflow engine that interfaces well with LSF.
Voyager -> The suite of applications built by the Voyager team, including Ridgeback, Beagle, and Hermes.
-> Distributed high-performance computing that's managed in-house. Most data processing and files are housed here.
-> IBM's Platform Computing (Load Sharing Facility) tool for scheduling workflows on HPC. It has a specific to managing workloads.
-> a YAML-like language for defining workflows.
-> Reactive workflow framework and a programming that eases the writing of data-intensive computational pipelines.
-> Sequencing of the Deoxyribonucleic acid ()
-> Sequencing of the Ribonucleic acid ()
-> Cell-Free DNA assay for patients with solid tumors
CMO-CH -> Assay for profiling clonal hematopoiesis mutations from blood
-> Assay for profiling patients tissue DNA for solid tumors
-> Assay for profiling patients blood DNA for Heme malignancies
-> Allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing
-> Whole Exome Sequencing
-> Whole Genome Sequencing
-> Whole Transcriptome Sequencing
-> one of the companies that provides sequencing machine
-> Type of sequencer from Illumina
-> Type of sequencer from Illumina
-> Type of sequencer from Illumina
-> Type of sequencer from Illumina
-> a company that sells instruments for long-read sequencing based on
-> a company that sells instruments for long-read sequencing based on technology