Access Quality Control (v2)
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add-qc-workflowdevelopMSK-ACCESS QC generation V2
develop
add-qc-workflowdevelopMSK-ACCESS QC generation V2
  • MSK-ACCESS QC generation
  • Installation and Running
    • Requirements
    • Installation and Usage
    • Inputs Description
  • Interpretation
    • Sample meta information
    • Coverage vs GC bias
    • Insert size metrics
    • Target coverage distribution
    • Capture metrics
    • Duplex family metrics
    • Mean base quality
    • Duplex noise metrics
    • Contamination
    • Fingerprinting
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  • Installation
  • Credits

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MSK-ACCESS QC generation

Workflows that generate, aggregate, and visualize quality control files for MSK-ACCESS.

  • Free software: Apache Software License 2.0

  • Documentation: https://msk-access.gitbook.io/access-quality-control-v2/

Installation

Clone the repository:

git clone --depth 50 https://github.com/msk-access/access_qc_generation

Credits

  • CMO cfDNA Informatics Team

  • Cookiecutter: https://github.com/audreyr/cookiecutter

  • audreyr/cookiecutter-pypackage: https://github.com/audreyr/cookiecutter-pypackage

NextInstallation and Running

Last updated 3 years ago

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